Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
---|---|---|---|---|---|---|---|---|---|
KIRC | rs10027161 | chr4:123250384 | A/C | 9.92E-6 | 506 | 37.03 | 46.3 | 4.22 | KM Plot |
KIRC | rs10029981 | chr4:186335706 | G/T | 5.26E-7 | 507 | 3.53 | 37.77 | 37.18 | KM Plot |
KIRC | rs10032989 | chr4:186336583 | G/A | 5.44E-7 | 506 | 3.53 | 37.77 | 37.33 | KM Plot |
KIRC | rs10096050 | chr8:18089375 | G/A | 1.21E-6 | 504 | 36.97 | 38.93 | 3.63 | KM Plot |
KIRC | rs10096254 | chr8:18089564 | G/A | 1.21E-6 | 504 | 36.97 | 38.93 | 3.63 | KM Plot |
KIRC | rs10113087 | chr8:92378483 | A/C | 1.83E-6 | 505 | 37.83 | 26.35 | 3.67 | KM Plot |
KIRC | rs10127971 | chr1:5628914 | C/T | 0 | 509 | 37.03 | 42.18 | 1.7 | KM Plot |
KIRC | rs10129331 | chr14:91747569 | C/T | 0 | 509 | 37.03 | 39.7 | 1.7 | KM Plot |
KIRC | rs10131830 | chr14:89984482 | C/T | 2.5E-5 | 509 | 3.6 | 38.83 | 37.5 | KM Plot |
KIRC | rs1013481 | chr4:169165992 | C/G | 2.17E-8 | 508 | 37.18 | 39.23 | 3.1 | KM Plot |
KIRC | rs10141546 | chr14:74965124 | A/C | 0 | 509 | 1.7 | 50.27 | 34.87 | KM Plot |
KIRC | rs10172033 | chr2:109514459 | A/T | 4.78E-12 | 509 | 37.75 | 26.5 | 2.3 | KM Plot |
KIRC | rs10179313 | chr2:109463875 | G/A | 8.92E-12 | 509 | 37.7 | 26.92 | 2.3 | KM Plot |
KIRC | rs10179853 | chr2:109444132 | C/T | 5.29E-8 | 504 | 37.77 | 26.27 | 2.03 | KM Plot |
KIRC | rs10191385 | chr2:109502584 | G/A | 6.77E-12 | 509 | 37.73 | 26.43 | 2.3 | KM Plot |